Scaffold Ga0114970_10011540

Overview

Basic Information

• Taxon OID: 3300009163
• Scaffold ID: Ga0114970_10011540
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6159
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011142	Metagenome / Metatranscriptome	294	Y
F043286	Metagenome	156	Y
F059759	Metagenome / Metatranscriptome	133	Y
F077016	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114970_1001154012	F077016	GGGGG	MSAERVREHYRKQGEARERARLIELLKEQKVIRHCAATGLLVFVNCNTREVLYLKDFLMNESAK*
Ga0114970_100115405	F043286	AGGA	LQDNQVECCRCGFKWAVNAEKRGRRDLLCVSCRVKPATTIQYGKLRCQPHRGAVNSDLDPVDEQGLLVIPGERVCQHRDCINPSHIVGD*
Ga0114970_100115406	F011142	AGGAG	MAVVKVSGKVSKVFGASSQGLSLVESYKSATGEDYTRTWTVWFAVSHNLELESEVTVFGQLSVKIEDFEDKTGKPGRKVKLDINNAQIDAPVVSAPF*
Ga0114970_100115409	F059759	AGAAGG	MTKEQIWQLLEIYRQMQVANTMTQYTNAFEELHEFIEEHCLKVGN*