Scaffold Ga0114970_10011051

Overview

Basic Information

• Taxon OID: 3300009163
• Scaffold ID: Ga0114970_10011051
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6321
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003332	Metagenome	493	Y
F024785	Metagenome	204	Y
F032279	Metagenome	180	Y
F084230	Metagenome	112	Y
F093869	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114970_100110511	F032279	GAGG	MHFIIKLTIAFALSAIGVGVSQIPAKVEFVSQSETPYEPVGGYGQVMADIYRYVPPVTTTTPVAPVYRHGDCSWLPALAIQAGWQPEQIPQLTKYALRESGCCPNRAGGDTVDKDCNITGVAEWSHRSDSGLMQINGVHWLPEHAKYDGLICKQMGICTQAPLLDAFTNLRAALLIYSRVGWSAWDICNRTKTCK*
Ga0114970_100110512	F024785	N/A	MKPYTVNAAPVVAKPLQGMDTWVTRAVYHSDKSLWNNGTWVVRDVRGKPGIVSNHAKGVACDISYRWISAKNIGRQDGRKVSLAYINKLLENADTLGIELVIDYALNRSWKCDRATWKGGTFEPGDWWHVEVNSVICNSPELAKQAWDKVFGLIPAVIKKPV*
Ga0114970_100110513	F093869	AGG	MSLRTGAKLENEALHARLVFIVGVTMAITFAIMVVGLLFGMLFVNMPAELSPLDGSIVDLLSTISVFLTGALSGLVASNGIKKSPKAETE*
Ga0114970_100110514	F084230	GGA	MTTYWAELNDNNIVQQVITGVDDATIEGIPAGDWYTNFVGAPCVQTYIDDPTKTYAGIGYLYSYETQDFIEPTNELINENIMP*
Ga0114970_100110516	F003332	AGG	MAGTAVVQSGNYELEIDTGFLQDAFTLDSATMGVLDNTQFVLNGTTNFASVLNGCDNVTIKRGRQDIGDQFSAGTMAFTMLDTTGVFNPFNEDSPYWDATTEQPGLAPMRKVRFARYDTNNVKQYLFKGFIVNYDYNFALGGIDTVTVYCSDDFYLLSQTYMDEFNVSEQLSSARITAVLNLPEVDFPIAQRAISTGTQTLGGSAAFTVDNGTSVQAYLAQINQAEQGRLFMSRNGNLTFQPRIGNTLSSSVADFHDDGTNIPYSGVGISFQADQVCNRASVTIRGSNNPQVADDAASQTLYFIQTQSITESLLHDNTAALSLANYLLEPEPIARYTSVKTAFMSLTGLQRDQVAIIDIGQTITIEHTFTTGATTSELAQELAIEGVEHTISLSQGHSIALFTSPTVIVYELILDDLQFGVIAPSLNVLG*