NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0114970_10003265

Scaffold Ga0114970_10003265


Overview

Basic Information
Taxon OID3300009163 Open in IMG/M
Scaffold IDGa0114970_10003265 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11966
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (65.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009142Metagenome322Y
F011284Metagenome292N
F035218Metagenome / Metatranscriptome172Y
F073252Metagenome120N
F090073Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0114970_100032651F011284N/AMTSEQGVEKTTEEVFTKKHDLHLTTLQMAAVESMERKYKKGVVEHGGTKLWEMPTARLVENAIEEATDQLTYLLTLRQQMHIVMELARDGCTDETLTNP
Ga0114970_1000326512F090073GAGGMSDILNEELNATFVRPGRDFKGQPLAEYTEGSRLLMIQAKEKEDSPVYFVWAFLYLHILLAKNRKEAIKLAWNKEAFKESLFDWVSDKTQEDRDMATNIVSSIIDEASKARVSIVSSGGESFSVGNE*
Ga0114970_1000326517F035218AGGAGMPLTKNPSNIDNFLFASGRMKMYRVGLAGSYTKVTGTGGVASIGNTGGFNINLNAGSAANGTSKAGYFDPTAALMTASAGKIDYSKRIRFSIGGMMYLASTNSVIRMVFGGTGNATDAPLAGVDGLTIKGFGVEFALQSSVIQARLIGYNASYLTPTSYTTLTNGFGLASSDNRFFGVVIESDGAGNIYLYGADSQTNPAINIGQTPLLTLTGGPTNDTSTNRFGPEIHCSNSSSTPSATPSAILQSTHWLLDVQ*
Ga0114970_1000326519F009142N/AMNNSVQINVEDALDNLLANIPNLNVYKTNRVGAKLFPSATISASVGGQLLGNYTGVYEVAVTIDYSDTAAKISQEAFDAEYCSIFEAFYSETQPLFTKIQNNIIDTKVYTARITGQTPTIKTAKRAWQRGLKINLICTPSELDDGLRYLDFHEKRNSMYVGVI*
Ga0114970_1000326520F073252N/AFSGVFKTPASITYVARADTTARTAFDAKFYDILEQLYRSPDLASYLTTNSNITFYVAKVTGDSPAVISQNRTWSRAMTLDITATAKK*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.