Scaffold Ga0114970_10001875

Overview

Basic Information

• Taxon OID: 3300009163
• Scaffold ID: Ga0114970_10001875
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15728
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (81.82%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006696	Metagenome	366	Y
F016248	Metagenome	248	Y
F030983	Metagenome	183	Y
F059768	Metagenome / Metatranscriptome	133	Y
F096879	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114970_1000187511	F030983	AGGAG	MAQREIETTISTENGVRVCVSEWDEGGVWLYLAGRGASMSAVLTRTEAQEMLAGLQEILAKEVAA*
Ga0114970_1000187518	F016248	N/A	MAELNDFQRKILLGQGAGITLYTQKEFDAALNEAKAEIMAIAIQTTRQAIMIEREECAKLADECVDIEKLGEAIRNRIPSQRQ*
Ga0114970_100018752	F096879	AGGAG	MNEVDKQYMERKQKDWEYDEPEVSDYAQFVQQVKGLIVWVIFVVGASMLVAAVLK*
Ga0114970_100018753	F059768	AGGAG	MTFQEQVKALPEEARIKFFRTIIALVDAAHLAGVPPTELAKMYADTYTHIEKMLEENAK*
Ga0114970_100018755	F006696	AGG	MKFLDFLKHQLKDRTPLEVISRDLSQAHLDRLEAEGAVEYASAVLELNMARIERLNNRIKEYKQ*