Basic Information | |
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Taxon OID | 3300009163 Open in IMG/M |
Scaffold ID | Ga0114970_10001432 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 17834 |
Total Scaffold Genes | 40 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 28 (70.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Montjoie, Canada | |||||||
Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 6 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003066 | Metagenome / Metatranscriptome | 509 | Y |
F004547 | Metagenome | 433 | Y |
F011384 | Metagenome / Metatranscriptome | 291 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114970_1000143222 | F003066 | N/A | MKKKPLAYLYEEYDVRSGNLLKSYLWSFHPSQLSYLNDLKNTTHHIKITPLIAGEPVEEYKGISKYDSKRLIESSEGL* |
Ga0114970_1000143223 | F011384 | GAGG | MYTKLDDQRQAKFIVNYIQNNKDCSIKDIVQHCAISRTRLKYLESQKYFILPKWTYNNKLDKRFKNRVYVSVAVGREYGRWTGY* |
Ga0114970_1000143237 | F004547 | AGGA | MKQLLMAITLLLLWAFLYNYAEAKELPKEMSMATEAGEIVLTSEECIFKKQGLQGYDYAAYATDKGHPNHEGCWKSDSYEGKHAVYIFFPEINQTAVFDAKLFQPKANI* |
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