Scaffold Ga0114970_10000735

Overview

Basic Information

• Taxon OID: 3300009163
• Scaffold ID: Ga0114970_10000735
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24579
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (70.45%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057002	Metagenome	137	Y
F063629	Metagenome	129	N
F079388	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114970_1000073522	F057002	N/A	MRSALTFTKESLHPSDYAGKRFDKALHDKYDPPARKAVSEWMKMKWGLDCRENPNVYGVDLIAYRANNPVGFVEVEVRSWSFCHHPTIHIAHRKAKLFQQDLPVLFFALTHDLSHAYWLKAELVKECPLIEVKNREVFSGEFFFDVPVSWFKYVDLTEPF*
Ga0114970_1000073527	F079388	N/A	MEKTKVINRKCLEAFNKLSEPVYHPQEYFMLGWNAAIDALSAEFSRKWEMNELEDIDFIVQPEQSPMHDDE*
Ga0114970_1000073532	F063629	AGGAG	MNTVVNLPQTSSFDKLMSEFKTIKILCEKIGVKYVTAYAWKMRNGIPKKWHKAIIEASEGRLTENDLG*