NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114970_10000365

Scaffold Ga0114970_10000365


Overview

Basic Information
Taxon OID3300009163 Open in IMG/M
Scaffold IDGa0114970_10000365 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33472
Total Scaffold Genes58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)46 (79.31%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006255Metagenome377Y
F007848Metagenome343Y
F014955Metagenome258Y
F021938Metagenome / Metatranscriptome216Y
F035159Metagenome172Y
F046243Metagenome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0114970_1000036513F035159GGCGGMFQTAFQVNAFQNDAFQIVITPVEPTKFGGDDAPYTREELKRLKGIQKKLRQAEEKRIAALKADAENRKQTIADLVDPKPVAQKQQSNIQSNQVVSVDIPSNLANIDRYIANLVTQQQDLQNAVLIRAAKLRLEQELAILEVKRQAELDDEEALLALLL*
Ga0114970_1000036515F021938AGGAGMLCPKCGYFEGNHIEAQKTDEEFFIEWWTPTIGKEAAKASWQDKLEMKTREAPTVMSDIPGHISMADGTWVDSRSKHRENLKRNGCIELGNDVPMQQKSPEMSRQSQEARKRQIAELTYAKLNYR*
Ga0114970_1000036545F006255GGAMGELNQLMLEHEEFLEEALDCMEYGGELLTQAQVDCIRQACGKPNRWKQRNDHVNPLLRDVINDFGAIFGGAK*
Ga0114970_1000036549F007848GGAMTTWKDFLGACLLGAILGALFAYSIPAEAQQIQMTNSAGYSMGTVQINGNTAQFVNPMGYTTQTATIYPNQVVITNSSNRSITVGQPSYTVPPSPLTPMTPRVLQ*
Ga0114970_1000036551F014955AGGMGKVDIERYIVAATGLGYLVVGLAQYFKGSPSNAFIWLGYAAAQIGLWMNLK*
Ga0114970_100003656F046243AGGAMKHMTRSYPPENAMLRPHKESTLEKQQKKRQDHNPPLELDDSNILNKKANQRMKRKEALSKAMNKYHDVDIVG*
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