Scaffold Ga0114970_10000272

Overview

Basic Information

• Taxon OID: 3300009163
• Scaffold ID: Ga0114970_10000272
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37834
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 47 (83.93%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002301	Metagenome / Metatranscriptome	573	Y
F006544	Metagenome / Metatranscriptome	370	Y
F023330	Metagenome	210	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114970_1000027217	F023330	AGTAG	MMTDNEKDIRDLLHPTDYSKSMDLRGQKIGNSCVCGCEVFIALISFDEYKEICFYFLDGECASCGSMVSLPYPDDTKEEDSD*
Ga0114970_1000027218	F002301	AGGA	MDYISEYESVVAHIASEYHKKYPMLDTQDISQILWMWFVTHPSKYKEWSDLDQKDKDKLIAKSLRNAAITFCEKEKAKVVGYEFLDLYYYDATVIEAFLPSIITESYEIPSKIKDLNFKFGKGETTDGNNWLVLRSDIASGYYQLSEAKQKILKVRFSMENCEWDVVAAEIGSTAEGARKKVQRAISSLIRNLGGYRPSFENDRVDTDKNDD*
Ga0114970_1000027249	F006544	AGGAGG	MTTLAAIQGDGWAVIGCDSRSSDESGRPIDMATHKIIENNGILIAGSGAGRGSNLLQFGWKAPKPTASENLDKYITQKFIPAMRKLFVDAGYDMKEDGDAAEHDSSFLIIVRGTIYPIFEDYSWDRDSRGIYYSGSGGDIALGAMEAMEVDNPNLTPKDAQVILHKAISIACKWDIFTAAPIVIETQYAK*