Scaffold Ga0114970_10000004

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114970_10000004

Scaffold Ga0114970_10000004

Overview

Basic Information
Taxon OID	3300009163 Open in IMG/M
Scaffold ID	Ga0114970_10000004 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	130852
Total Scaffold Genes	105 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (11.43%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)		Depth (m)	6
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013274	Metagenome	272	Y
F013864	Metagenome / Metatranscriptome	267	Y
F034077	Metagenome / Metatranscriptome	175	Y
F038994	Metagenome / Metatranscriptome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114970_1000000425	F038994	N/A	MVLSGPKRVSRTASLVNSGCHFGSMPGSAPKIGRGSWSSLTYRQNGMTCDCLRKIRFGTCAEQYAYLKEKNLIFNCKLTGGVGRQPFTKNCAPGKA*
Ga0114970_1000000426	F034077	N/A	MVNSKIARRVMFNSTGPTNAIRTDTMNGGGDKKGGSTPAGTGQMRSFAMRNTISEPAKNKDFVFKFIERLSPARHSGPKL*
Ga0114970_1000000429	F013864	N/A	MNAILPNPNDQSTDTLAKYIVLGIFIIVALVTIQYIFRNHIGMIEGLGNRNSKKGSTDPLEDENDGDIITIAKRQEELTTKTQKSLNMDSHYNHYNKIIENMDQWVNAKIVNSLKSVSREVHGEGKMEDIIRHMNELNTMNKFKLTLEECSRYIDSS*
Ga0114970_1000000471	F013274	N/A	MENLAGPEDLVPSFKIFSMLIIITIVIKMIFQYGYNENAAPSFSEMKSLTDISLVKDEIKKKDSSDLKKDVTVYFKSYIFYYLTLLWTFCLIITIISVTFNKYNPDKPGCMMRMSLLNIVPLGLFTGIILWIIYQNTVYFNKINSGHVAESYITFDVAVNLLLLVQASIIYAYINQQMFCAKEMSQYSEALGKYGPYIAMFVAIISIVCMVLNEIILRFFTTDG*

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