Scaffold Ga0075423_10204013

Overview

Basic Information

• Taxon OID: 3300009162
• Scaffold ID: Ga0075423_10204013
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2073
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8444
  • Long. (^o): -83.9599
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001356	Metagenome / Metatranscriptome	716	Y
F002523	Metagenome / Metatranscriptome	552	Y
F004910	Metagenome / Metatranscriptome	419	Y
F016609	Metagenome / Metatranscriptome	246	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075423_102040132	F002523	AGCAG	MLVIISVRRLDNDRIEIGVARPQHDANPTHNYPSEKEARAVLSDFGISEELMASHLKLLAQMGAREQLKFPPMDIPQNELLSKGFRL*
Ga0075423_102040133	F004910	GGAG	MAISQRLVDPFREFKVSVRYSWQESYHAALLETDWTKMVELVQKAESDIHKRRLELTQDHNGTQEEREAVVNALNGLRVLRMDAATWRDRQNLK*
Ga0075423_102040134	F016609	GGAGG	MTEYKWHEVYKAALLETDWSKMEERINAAEAALHARKHEFDLNHGGTPEENQAIEHALRALGVLQTDLATWLGSKRAS*
Ga0075423_102040135	F001356	N/A	MPKSKASPPADDLRYRQVRIDSLNKGRREKHHNLVVGILEELEPLSPGSAMEVPLADVGGIGLANLRSAVHRAATSRGLQIETLADEKNFYVWKKK*