Scaffold Ga0075423_10088483

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0075423_10088483

Scaffold Ga0075423_10088483

Overview

Basic Information
Taxon OID	3300009162 Open in IMG/M
Scaffold ID	Ga0075423_10088483 Open in IMG/M
Source Dataset Name	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3234
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location Name	USA: Tennessee
Coordinates	Lat. (^o)	35.8444	Long. (^o)	-83.9599	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008593	Metagenome	331	Y
F009924	Metagenome / Metatranscriptome	311	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075423_100884831	F008593	N/A	MQPYKGYFIEGSAMLVHPFSPDWYVGGSVLVPGRHGSIVEITRFRVQRFTVSIKDLAEWFGLEVKMTTRLCLSGPCEL
Ga0075423_100884833	F009924	GGAGG	MIALQALAILESAVLECKQRSIDTPEVMEALDLLAPHIQRQWVILQFRSHLHRDPKVEVDAEGQQLVLRATFPGIRDAVRELLAVRTDALARKFADTHDMQVKDELVRLLKEYGKLKEPWVFRPS*

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