Scaffold Ga0075423_10021276

Overview

Basic Information

• Taxon OID: 3300009162
• Scaffold ID: Ga0075423_10021276
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6440
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8444
  • Long. (^o): -83.9599
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004395	Metagenome	440	Y
F018448	Metagenome	235	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075423_100212766	F004395	AGGAG	MTRHRLLLLIIFATLATFSSNAQEVEDTIKIKTRVVFLDALVKDKKTNLPISNLTTENFEVLDDGKPRDISHFTREGQARKPLALVLILDLREDGAGRFLKRPEILKAMEDELAKLPPGDEVAIMAMDISEDEQRVWLTEFTNDRAKLAAALARVPAMCVASDLPPEHPPTNVSSEGKPDDIVQTETIRGKNGTVITRSTRRDGRVDVKRTDKDGNVTVEINAFYDIPAAVREAASKAEEMRPNSQASIVWVSDGIAPIFFEDRAATEQILIRNNVIFNSLTVELRTLFKFLMPIGKPIAGWVGLSIYGSAKYLAQKSGGEAVKVGRAKDYGAGLSRIIGNLTARYSLGFALAESETDDGRMHSLEVRVKAKDEKGKNRKLQVSSRQGYYMSTTLPKEAAAKAQ*
Ga0075423_100212767	F018448	N/A	FLARAGMKAATTAARIKGGEAKRIAEAGSVKLAVFENQEFAGDFTQFRASLNEALTATWMPLIQTLSSKTDEQTYIFLRSAGEKFNVLVITIEQREATVVQVTLSPKNLALLMKDPEGTGKAITDEATLIDQE*