Scaffold Ga0114966_10098475

Overview

Basic Information

• Taxon OID: 3300009161
• Scaffold ID: Ga0114966_10098475
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1970
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F000852	Metagenome / Metatranscriptome	860	Y
F007644	Metagenome / Metatranscriptome	347	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114966_100984751	F007644	N/A	EYMKIHLISLNQDLEMNPESINVIDIPGQIVATEHLLSVATDIMNSTNERYE*
Ga0114966_100984752	F000263	AGG	MDMTMEDIGLPPHLQRTVNAGVSGLDIIHGELKNLMLMAEQELADAIEREEESEEAMDSMVRTECEGALDTLVALYQLTYQLSFAIGARDEA*
Ga0114966_100984754	F000441	AGAAG	MSDNYLNDQLNTAQKLLWGGSETENIEAHNIIAELIKYRIEQTNLT*
Ga0114966_100984755	F000852	AGGA	MTTKREYLKQQGITVGVRGRFSGAAKVALAEAATKGIVFTSEPVNKAK*