Scaffold Ga0114966_10065942

Overview

Basic Information

• Taxon OID: 3300009161
• Scaffold ID: Ga0114966_10065942
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2517
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Armatimonadia → Capsulimonadales → Capsulimonadaceae → Capsulimonas → Capsulimonas corticalis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015339	Metagenome	255	Y
F018175	Metagenome	236	Y
F061845	Metagenome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114966_100659423	F015339	N/A	MNIDPKIYSEEYVRGRIYSFIRFKAYLRKIASIFCEEFQYDKDDIIEVSLSDDGKTVWIHFDSGTIGFASELLWDKNVRETFRKSYEVD*
Ga0114966_100659424	F018175	N/A	MDKEPKNQKQYYHNKVREFEKRTGINMNVKNVSKIYDCNIEQVEYNTPAAMDMMQKHGCYIYHDLLVEEDPRSNGTNWLKFGYAQVNSKTYKYYYETKQWGQEILKIDLEHYKNKTWKAAKLDMYNSPYLDPGEDYSPYAIEPVSIDSTSNKHKGSSFDRFLEEFNIMCKRDINWAVKMLEHGKMMSREGNPSLTLFPKKYDYAESTITTADLFAEDWVVVPNKTFKDVLDDLNLGKTIRRKSWHPDWGVGKYSRYGKIIYLDLIADDWEVVDVVAEVNKQQEQILKDRNEH*
Ga0114966_100659426	F061845	N/A	EDGYLVADSPLPVDFPFEEINVNYTHLIYHTWNEIGEVRTWGPDNSYWINFRPFADERHWDNMGFEVLTSFPNVKLL*