Scaffold Ga0114966_10040922

Overview

Basic Information

• Taxon OID: 3300009161
• Scaffold ID: Ga0114966_10040922
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3343
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000852	Metagenome / Metatranscriptome	860	Y
F001019	Metagenome / Metatranscriptome	804	Y
F009685	Metagenome / Metatranscriptome	314	Y
F013414	Metagenome / Metatranscriptome	271	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114966_100409224	F000263	GGA	MNAEDIGLPPHLQRMVNADVPGIDIMHGELKNLMLIAEQDLKDALEQEELSEEAMDSMVRTECEGRLDTLVELYKLTYDLSFAIGVRDENKKDGH*
Ga0114966_100409225	F001019	AGAAGG	MSTYEPSLEILEVEYSCSPGGVDLFEVYDKTDIPLSVPIYETENLTEAVLFCYNLGKDFTVRTLAEWNERELAYVN*
Ga0114966_100409227	F009685	AGGAG	MQMTNEHIDAVLAEAQGLLWGGSETENIAAHNLISKLIQDRMSEKILK*
Ga0114966_100409228	F000852	AGGA	MTTKREYLKAQGITVGVRGRFSGAAKVAIQEAISKGVTFTDPQPVIKKAK*
Ga0114966_100409229	F013414	AGGCGG	MKTREIKVAEQLVNLTEDHWFNPAILARYLTDQPFYTVDRIMELVAQIIRWEANRYTDELDTEDGIYNSGLTSEGLFLANELNQTLTKLIKTYKWENIKLPVDPDKFIKRLPKVDEQSYRHSWLHEEQRDPILMNHPFI*