Scaffold Ga0114966_10032244

Overview

Basic Information

• Taxon OID: 3300009161
• Scaffold ID: Ga0114966_10032244
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3849
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (94.12%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001562	Metagenome / Metatranscriptome	670	Y
F004840	Metagenome / Metatranscriptome	421	Y
F009143	Metagenome / Metatranscriptome	322	Y
F014129	Metagenome / Metatranscriptome	265	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114966_1003224410	F014129	AGGTGG	MTTLNIREITLENVSADEANLIVCVFCSDYSSEFYCVKCNEYKGLMTLGEWLSYTQESWLS*
Ga0114966_1003224411	F001562	GGGGG	MNKSQFEKDLEIKESFIDLLNDIYPSVKIGYSTFTPAEILECCDPVAFSIGLIEHEDYLAELEDET*
Ga0114966_1003224414	F009143	GGAG	MMTKWDTIQADVADAYVYLEEEEAYNKALEEGLVIGSTEYDEDELSKSLTLDWEAYE*
Ga0114966_100322442	F004840	GGA	MYKITCAYDSNAPHWSAEYENEFGAWENFFLFTDWGFADEYSTVNLYTPTGKCHTKVFYREGRKVVVK*