Scaffold Ga0114966_10029603

Overview

Basic Information

• Taxon OID: 3300009161
• Scaffold ID: Ga0114966_10029603
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4049
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006262	Metagenome / Metatranscriptome	377	Y
F010611	Metagenome / Metatranscriptome	301	N
F019637	Metagenome / Metatranscriptome	228	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114966_100296031	F019637	N/A	NLQICKESFDISLITGERETPIISSDQVVNTFTKMPNQIQFLVDQFGLANTAWFIRLMKSGTTPEQIVGSLVPSNYDSRRDGVFRALQFAANLPDSMMPEEIKNALQP*
Ga0114966_100296032	F010611	N/A	MNQKDYRRHSGLTSGYVTDLVSRGMPLDSPEAADAWRAKNIKARTKRLPIATPTIATTTIEQEGPYRPIEAESPLNTATAATDSPEGAYERQRQIERAAYDLAVDALRGGRADAGRLVAIHAAAAKNLTSARDEVITQAEKERRLVSGDWVRRVMQEHDGAVASLIKAMPKQLSGRIAPHDPEHAERELTRWVQEVALKTLHNTDPWKS*
Ga0114966_100296035	F006262	AGG	VTLLAALAAKSIAAATVIESGQVVRSTSSSDVSVEFAEPGKGAPTPSEMVEMWESLVDDYDLAVYYLNQDGITSPTDAQIYTKMVAVVLVAATSFGGDFSNFRREASYRGMS*