Scaffold Ga0114966_10028521

Overview

Basic Information

• Taxon OID: 3300009161
• Scaffold ID: Ga0114966_10028521
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4139
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041640	Metagenome	159	Y
F080895	Metagenome	114	N
F098654	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114966_100285214	F098654	AGG	MRSIWIAIGRDPEFGTSTTVEHIYVFESSFDAWKFVNRIQDYDHLPAEARAVKWDVSEHPINLNKVPALNEYSAIYLDNGEDYDD*
Ga0114966_100285215	F041640	AGGAG	MTKTAKIGTPVVYKNCYIVPVNDGFDVVDKTTGRWIHLHSQRLAKWNATVWTRLSTDFDSSNPLSDKKLTKLEVVAVEIDKQPKGKV*
Ga0114966_100285217	F080895	GGAG	MTLHSTEYDDDQHAWHNCVLCGDDVHHERYALGYRLCMHCGNQAAISARQSWCVVQPYGKGPYMLVTEASAPKTLLDTNQKYPRS*