Scaffold Ga0114966

Basic Information
Taxon OID	3300009161 Open in IMG/M
Scaffold ID	Ga0114966_10024522 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009161 Open in IMG/M

Scaffold ID

Ga0114966_10024522 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4522
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (42.86%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

4522

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (42.86%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	7
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024040	Metagenome / Metatranscriptome	207	Y
F032536	Metagenome / Metatranscriptome	179	Y
F048123	Metagenome / Metatranscriptome	148	Y
F062447	Metagenome / Metatranscriptome	130	N
F104483	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114966_1002452210	F024040	N/A	MILHTDMNFFVSGHNWFAKVSLDKDVKKSDRYTEATTRAIESLLDQEEKEGVDIKVLDYDDYGLGLITLTYDEKHSKKEGEHRVMLTSNILANAGRWDDYKTIKDYEEKCKEEGL*
Ga0114966_1002452212	F104483	N/A	MKKKMKKKIIDKIDLVIEDIINIQELIDFDTSDSSEYDLDSVVNLLAEIRGRVNNEEEETEKIDLKDL*
Ga0114966_100245225	F048123	N/A	MKPRYDFDKGKMISYDGEIIEFAGSNKIDKYSDQIEEIMSLFNLKKGEYLVTDESKISDFGKDTINILRLAKFKKKYKFSVMNKDFLYKIAERMYSYRPF*
Ga0114966_100245228	F032536	N/A	MSQRKTFEELMRSFRFHKNPIINWFLTEVNYYSHTYLNVKWGLKNKFQRLIRGYSDSDCWNLPQAIARFILPRIKHLRKNYNSLANRNHLITIDGKVIQYKADQKNLQLKEDSTGYVEGYIDKEINKPISLDASEYEYVLDEIIFALQMVVDEDSTDIGNLDRLYEVYPEGFDPIEDRQMFLTPQGDGTSLVEFENKDNIQPDYSKLNKAYERQRNGLILLGLYFKDLWD*
Ga0114966_100245229	F062447	AGGAGG	MKHKILWEKNSRIKGIVPKEQIIDKTQTHKFPCGAVTIRMSNVNDKNPTAVAYFHGKEAKGTSWNGSNYTYAENKLMVSLTKEGNGYNFNGSIIDFFSLQDLKEVLDLVRETLNKL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114966_10024522

Overview

Ecosystem & Geography

Associated Families

Sequences