Scaffold Ga0114966_10021113

Overview

Basic Information

• Taxon OID: 3300009161
• Scaffold ID: Ga0114966_10021113
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4932
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (56.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011394	Metagenome / Metatranscriptome	291	Y
F066776	Metagenome / Metatranscriptome	126	Y
F072349	Metagenome / Metatranscriptome	121	Y
F105192	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114966_1002111311	F066776	AGG	LLHLTEKGVEIFIKRSQTNLQESFWKNYDLVIWKKDIGGYTDTKGMYRKNAWGKAEKFSVSRTGIWKLPKKYVKYFK*
Ga0114966_100211137	F105192	N/A	MDISTTQIIITLIAAAISGAFTAQINNIRAKKERLARAEDKAHDQLLLELKDLEIKLYKLEKDLNEWKDKYFEALQELIRVKAELEGTLLKLTHIGMHSDED*
Ga0114966_100211138	F072349	AGGAGG	MDRVLCYCCNKSKNELATKKSALLPINLLLCKSCTDNKLEPRWIIILAGRQYGPEHVKEHIAKKKYTGSDITASELLI*
Ga0114966_100211139	F011394	AGGA	MFIDKNKDHFKYGINEWTGEPNKPTFYNKEMALKIRELKKPTPTLEMDIVKYPEFLAIRLYENNFAQYDGSMRVRVIEYIEMVKNILESYGVRVELEGKPGGRNHG*