Scaffold Ga0114966

Basic Information
Taxon OID	3300009161 Open in IMG/M
Scaffold ID	Ga0114966_10019859 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009161 Open in IMG/M

Scaffold ID

Ga0114966_10019859 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5106
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (45.45%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

5106

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (45.45%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	7
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F003213	Metagenome	500	Y
F003332	Metagenome	493	Y
F013413	Metagenome	271	N
F032279	Metagenome	180	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0114966_100198591	F003332	N/A	TTNFASVLDGCDNVTIKRGRQDIGDQFSAGTMAFTMLDTTGVFNPFNEDSPYWDATTEQPGLAPMRKVRFARYDTNDVKQYLFKGFVVNYDYNFALGGIDTVTVYCSDDFYLLSQTYLDEFNVSEQLSSARITAVLDLPEVAFPIAQRAISAGTQTLGGSAAFTVDNGTSVQAYLAQINQAEQGRLFMSRDGDLTFQPRIGNTLSSSVADFHDDGTNIPYSGVGISFQADQVCNRASVTIRGSNNPQVADDAASQTLYFIQTQSITESLLNDDTAALSLANYLLEPEPIARYTSVETAFMSLTGLQRDQVAIIDIGQTITIEHTFTTGATTSELAQELAIEGVEHIISLSQGHSIALFTSPTVIVYELILDDAVFGIIAPSDNVLG*
Ga0114966_100198595	F003213	N/A	MNTKKINRSHRQIGDQTTKGGLLGIMIYTMSRNNVDPVLIGLIVPVAASVLAWISTKIGDPDLACMFIPDDKKAD*
Ga0114966_100198597	F032279	GAGG	MHFIIKLTIAFALSAIGVGVSQIPQPQPDMSTTTPTDKPYEALGGFAQVMADIYRYVPPVTTTTPPAPVYRHGDCSWLPALALQAGWQPEQIPQLTKYAARESGCCPNRAGGDTVDKDCNITGVAEWSHRSDSGLLQINGVHWKPDHPQYDGLICKQMRICTQKPLLDALTNLRAARLIYLRVGWSAWGN*
Ga0114966_100198598	F013413	N/A	MRSYSATTVLYHVQNINPNRKEKAMTENEYNETFDLQMEREHQETLRRMQEFRLIGEQISKMPDTPPKVLEIEVRYLMGIIGELETRIKDLESEARRLEMLLTRAN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114966_10019859

Overview

Ecosystem & Geography

Associated Families

Sequences