Scaffold Ga0114966_10016346

Overview

Basic Information

• Taxon OID: 3300009161
• Scaffold ID: Ga0114966_10016346
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5716
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014617	Metagenome / Metatranscriptome	261	Y
F044491	Metagenome	154	N
F080030	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114966_100163461	F044491	N/A	TGVDSTTGEFQFDVNVPRPNQIIYAATGSNVQYVVTYDGSVEYTQTCTWITVAALITFLGVTISNPSDDYTLATQATNAANLFCYRRRQESGYHDALSSSPGADATLGTLMYGAALWRSRGSIETAFAAFDTMGTPTQQSLTPIVKQLLGIPRPAVA*
Ga0114966_100163463	F014617	AGG	MTYTIASSKVGVIGEPFIPADGINVAALLEGGFIVEQSTPKPKKPAKTSTDTNEEI*
Ga0114966_100163465	F080030	AGCAGG	MRIKLKLVRTIGAEPEYLYTTLFSTALWEEKFNKKPMDAEQSGFRDWSFWAYTVLKVKGEKLPDDFMKWLEENPEMTCIPEADLTNPNPTDAAPIDGN*