Scaffold Ga0114966_10010405

Overview

Basic Information

• Taxon OID: 3300009161
• Scaffold ID: Ga0114966_10010405
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7412
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005476	Metagenome / Metatranscriptome	399	Y
F012428	Metagenome	280	Y
F047558	Metagenome	149	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114966_100104052	F005476	GGA	MSLTIRSVDVSYIHQIWPTVKPYIEDALNKGHDFPDWAYCYNIDHVQQYVTSGQWLLIVAIDEEKQIHGACTVSFINYPLHRVAFVTCIGGKLISNQATFEQLKQLLKSHGATKIQGSGREAIVRLWKRYNFEPRNTLVEVLI*
Ga0114966_100104055	F012428	GAG	MNSLSNVIRLFFNTINTVQQLNLASLNLDLRTLPTDADYVNLRLGDVYRDTQGGTLQSGTNILRIKVPIELKGVQGTGAVGSVGPVGGTITKNLTGVSGSGRVGTVTP*
Ga0114966_100104059	F047558	N/A	PKPEQIINVSISEPAPAKPEAKKDDSTVGKVIGLIEWVDNPFKLFTVILLSFLFFAGYFAWDSRTVILNAITSSSHQPQLKEIKVLEHIAEKLKKDLEAETVLVHKVALVVNSRITLLSYGPKGRDTTLDGYNSTLFGKDSTRNTAVIAMMNGEVYCDKLIASGKTSDWEEKQGVGFICRGSIPPEMGAFEGYISVGFTKEPQDLGAVKTRINLAATEMAK*