Scaffold Ga0114966

Basic Information
Taxon OID	3300009161 Open in IMG/M
Scaffold ID	Ga0114966_10009018 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009161 Open in IMG/M

Scaffold ID

Ga0114966_10009018 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8049
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (84.21%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

8049

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (84.21%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	7
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011646	Metagenome / Metatranscriptome	288	Y
F011756	Metagenome / Metatranscriptome	287	Y
F014714	Metagenome / Metatranscriptome	260	N
F018703	Metagenome	233	Y
F022400	Metagenome	214	Y
F100350	Metagenome	102	N
F102505	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114966_100090181	F011756	N/A	MAEPRYLSGDEFALSGGYEELINCNECDVMYDRVEYQSDTCSECEDKRVMREKESK*
Ga0114966_1000901813	F102505	GAGG	MRRTSQDLYDGIGTWKRRPIRAGKKTYMPSHKRWGKITVTKMTPVPEGIITTTDILQPVSEVVEEVTTTEENKDVK*
Ga0114966_100090182	F011646	AGGAG	VSNVLELRNGAVKRIIFYEISDAQNIAIWGGESPSEALKWYRESPLDSKIYVQEWLTDEEDAREVSPQIEITSIVLSTIANCMERWSN*
Ga0114966_100090183	F018703	AGGTGG	LSNTERRIETAKAQAVRQRNYRRARDRALARLGNDYPNVYRAYLEEEIEADEKMGKKWIDISGSTKSARSRSR*
Ga0114966_100090184	F022400	AGTAGG	MVLSQTGRQHKMRKTAIESSQKTTLRLVLGGVGERASAYSPFGPVRAGLITTRPTNEVVQLTELLNYLERKIAEANIKSLEVLNTYLNDTEHLVEPTSFGLTPALTTTKV*
Ga0114966_100090186	F100350	GGA	LIYSFKCECGNTRDVEQSIYAEVVEPMCTDCQESMYRCWSPTATIFKGKGFYSTDER*
Ga0114966_100090187	F014714	AGGTGG	LGIELKEPELLDYLKEFYYSDLEKSEEFDNWDCISLEHKMFIELKSRKTHYPDLLIEESKYQGLIMAAGIRSLTPWYINATPEGVWGFDLSTIPQPKWEDKWLPITTEFANKASRTKLVGFLKLEDGILF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114966_10009018

Overview

Ecosystem & Geography

Associated Families

Sequences