NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114966_10003184

Scaffold Ga0114966_10003184


Overview

Basic Information
Taxon OID3300009161 Open in IMG/M
Scaffold IDGa0114966_10003184 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14505
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (57.14%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000722Metagenome / Metatranscriptome922Y
F014617Metagenome / Metatranscriptome261Y
F027510Metagenome194N
F044491Metagenome154N
F080030Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0114966_1000318412F027510AGGAMTINNLPKFVILLVGLLCLTALMITNKIDMASGVPMLTMIIGYSIGNGVNAKQGGESSNVFSNKRKQ*
Ga0114966_1000318417F080030AGGMRIKLKLTRTTNAEPEYLYTTLFSIALWEEKFNKKPLDAQNSGFRDWSFWAYTLLKVRGEKLPDDFMKWLEENPEMTVMPEADVTNPNPTDAALIDGN*
Ga0114966_1000318419F014617AGGMIYIIASTKLGIIGDTFVPADGINVAALLFGGFIVEQSTPKPKKPAKTNTDTNEE*
Ga0114966_1000318421F044491N/AMTTYNTATKQLISNYACISTLEPTDIAVGQSITVASIGSPFNGTFTVLALPQYAFIGVDSNSGEFEYDVEVPRPNQIIYAATGSNVDYVVTYAGTVTYTQSCTWITTAALITYLGVTITNPSDDYTLAEQARNAGNDFAYRRRQESGYFDSLTTSPGHDATLGTLMYAAALWRSRGSIETAYAAFDTMGTPTQQSLTPIVKQLLGIPRPAVA*
Ga0114966_100031848F000722GGAVSEIPYPEPGMSQETREAMYPDTYSDKLGKVFTNMIDEIVRPNHVPSKAPDYSILLDELELLHEAHITVGGQQNRFNAAVIRSAINVIRAL*
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