Scaffold Ga0114966

Basic Information
Taxon OID	3300009161 Open in IMG/M
Scaffold ID	Ga0114966_10002160 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009161 Open in IMG/M

Scaffold ID

Ga0114966_10002160 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	17699
Total Scaffold Genes	30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (30.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

17699

Total Scaffold Genes

30 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (30.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	7
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019449	Metagenome / Metatranscriptome	229	Y
F026860	Metagenome	196	Y
F042341	Metagenome / Metatranscriptome	158	N
F074557	Metagenome / Metatranscriptome	119	Y
F097349	Metagenome / Metatranscriptome	104	Y
F101160	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114966_1000216010	F097349	N/A	MNHRPKAITDPVRLEAAKELILKHRAKSGKQSQYELYGFLFGLRVQIDRVDHAPTSGEFAPLIGKKRIASLFTAYDLIVEFRGVWKTDAEAKVVAWEAASNA*
Ga0114966_1000216016	F101160	N/A	MTSPYNSHSSAISAMNNLIDKHVPMREAALQEHYMKADETRALLKAMGCWPKPTGRPSELRGKKPKNGKTASEKGREAYEWARKNNATYTEAAERFRISADSIHSYRQYRKLPKLKTK*
Ga0114966_1000216019	F074557	N/A	MTLVLALSAALLTSEAVPEAVVQAVEQVESSGRGAKTPDGDRGKAIGCLQWHSAAWSDCSAVRLKAGLAVYPYSDAKAPIRAREYARTWLTVLKVRLATQLGRQPFPGEIWLAWNLGWSGFQRYGFSWAFVSRVKFDKARQVNTLAWGLPKRPAISR*
Ga0114966_1000216020	F026860	N/A	MSKPADILARLMRELTASAEDHPCPAGFYTVEDIRAELRMAYTRNASSRAYDLFRRGLLERKAHKFKANTGQCHKAYVYKPLPPYRSIREASEGLFAHQADKVPKGWIRVMDYCLSARVSDVALRGRITRAGLKPKYFKTPRGIIGLHQNAYYKKTDLDRLFIKR*
Ga0114966_1000216027	F019449	N/A	MTTETFTTIVVPGIASLAYASAGVACFCVGRPALGVMWACYSCANIMLLMSVRK*
Ga0114966_1000216028	F042341	N/A	MSSPRPKSDPPAVQYGEPHFTFRVLGRVKPTHDPKCPTPFGYCWKGFGDIHVDPRQSEEELIDTVVHELVHDALPYLDEEAVEKAANRIASAMWKLGYRRTVIQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114966_10002160

Overview

Ecosystem & Geography

Associated Families

Sequences