Scaffold Ga0114966_10001752

Overview

Basic Information

• Taxon OID: 3300009161
• Scaffold ID: Ga0114966_10001752
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19827
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (66.67%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000868	Metagenome / Metatranscriptome	853	Y
F001280	Metagenome / Metatranscriptome	732	Y
F008305	Metagenome / Metatranscriptome	335	Y
F014250	Metagenome / Metatranscriptome	264	Y
F024549	Metagenome / Metatranscriptome	205	Y
F038205	Metagenome / Metatranscriptome	166	Y
F038246	Metagenome	166	Y
F047650	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114966_1000175218	F038246	N/A	MVTMGILDNFEIFLEKTEETEKCHYCQSKAKYSDIAKVDEKKYDVVGVCECHSFKGLSS*
Ga0114966_100017522	F001280	AGTAGG	MCIECGCESVGSETGIVPAPVIDVSRDGESGLNLSMTSTPEQTRQFINGK*
Ga0114966_1000175228	F014250	GGAGG	MSYKDTLLEPRLQKLVDLGESGTDILHGELKNLMLEAETQLDYATKAEEESEEAMDSMERRYWEGQLEALTECYILTYNLTFAINERIISRG*
Ga0114966_1000175229	F008305	GAGG	MLGYTYKDIQAFGNSLTWAIDTAKSQGEEQQYKQLLIVWDFFEGLLAEGYIDENTYYG*
Ga0114966_1000175230	F000868	AGGA	MSFLENENQMVIDAEYSYIGEQLVEDWTNSNLDEGQLFADFRFAEMCESNYLKGRFNQFYDLKPEDQYYVEWDEEA*
Ga0114966_1000175232	F047650	AGG	MAEDVSPVYYCDSCSVARASYLIKLLDGELAFCTHHYNKSKKALDEKAYEVVELNKTEESPKLKEMAE*
Ga0114966_1000175250	F024549	N/A	MYRLDTYYDGELEYTHKFADALQAFEAFAKCYDVGFAKEFATYNLSLPTGKMYTKNFNRIGLVSQK*
Ga0114966_1000175251	F038205	AGGA	VGNILEILAVSCDECGGAGFVFWGDENNYDVESCDCALEMWGI*