Scaffold Ga0114966_10000049

Overview

Basic Information

• Taxon OID: 3300009161
• Scaffold ID: Ga0114966_10000049
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 101173
• Total Scaffold Genes: 167
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 142 (85.03%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005167	Metagenome / Metatranscriptome	410	Y
F009327	Metagenome / Metatranscriptome	319	Y
F012098	Metagenome / Metatranscriptome	283	Y
F014843	Metagenome / Metatranscriptome	259	Y
F014968	Metagenome	258	Y
F019092	Metagenome / Metatranscriptome	231	Y
F025484	Metagenome / Metatranscriptome	201	Y
F030064	Metagenome	186	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114966_10000049132	F009327	GAG	MDEGIVDELRDPVGTEVDWWLWDDAALAADYDTFVDPIYDVSNQEDGKGRRWNEPFKLPVIMAQQLRGTNIMNERGYYTTDTLRLVVAVADINRLLPAMITDPALHIKDRVVFRDAVFVPTRVLPRGLYKERYSVVTIDCNQVNAEELVNDPQFQDLTN*
Ga0114966_1000004915	F014968	GGA	VIVTLSKEEVRACADIALNRWMMKFGSVDRPNYAGENKKYLEPEIAANVRTIVAEYAVAKLYKQPFTFPFYTNEEHYFRKDFPDVMPCYEVKSVRTKDEIPVFPKDIRPGVILVGARVLDRDYYSEVEVYGWLPTEECTKDEYHYPPENSWRIPIDKFNDTIPG*
Ga0114966_10000049162	F012098	AGAAG	MPKVHTLGPLFVQVTRFPYDWGNKLVVRGWSQEIEEPYRTATPFIVRLPKYHGLVLGRWGAMKEEEEALSGALARREVTYEDFTEEAGWTPATESNRETSIDGLYSRFDFMDGAVNVYDRQTHFDMAEAPERG*
Ga0114966_100000493	F030064	N/A	MTIGIVTGALISLGVLLNPLYKRVKHFMQWMERFMRDWEGEEAAPGRDEVPGVMQRLNKLDGELSQNGGKSTKDTVNKLYANQELVMEAFVEMGERLIAIENCLNKSEVNTPNPVN*
Ga0114966_1000004966	F014843	GGAG	MNVMLSLDGVLSSDSGDPIRAGVMLYYALNINNRVAIRTSRKKEDAEHWLNSHGIINYDDLIDYSYHLEGEDLKKRQFILSRSRAPIEMYVDADPSMCAWVFEEQGIPAIMFMNPGYLAVERRPDAPKKVRQWSDIENSITRVNLAKSKEAANPKELEFWDD*
Ga0114966_1000004969	F019092	AGGAG	MSNVPILGEKPKDQEPMFRLLYCLVCQSLDELPPYDGEPELDHLLAVACENHVFDSGEPHKGKLFVLPLRAWAHQESKREIISQIKGGGSKGLAAIDETFYESRSTFLEDAMSCYQRHNKPKDGCPDWHDNNLMLIPKTEKDRIKEGMGKYKDTPGQKTYLCDFCPVAIGVADRKQKLLGMK*
Ga0114966_1000004972	F005167	N/A	MNAGLDAGATDGKYRKVRPDTEVGTESAATVANRQSLHPFYGYGFVTTEYPGKVNPGK*
Ga0114966_1000004974	F025484	GGA	MDGDGMLSMELQARQIAENATRYNGSAPCPTCGVIMNPVDFMTNRGHCLSCVTQRNAQRVKGKMA*