Scaffold Ga0114981_10023087

Overview

Basic Information

• Taxon OID: 3300009160
• Scaffold ID: Ga0114981_10023087
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3585
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016936	Metagenome / Metatranscriptome	243	Y
F024061	Metagenome / Metatranscriptome	207	N
F042326	Metagenome	158	Y
F059946	Metagenome / Metatranscriptome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114981_1002308710	F042326	AGGA	MISDALTVAAIFATGGLIGYIIGAARGRKRGRDEQWVECFLAGEAREKLRREKDGRFKSKTK*
Ga0114981_1002308711	F059946	N/A	MNKRKSDEAKRIQCDAMLAQFIPVKTIAQALRMSRGTVSERAKRAGMTRHYITEAEARLLFKNRIGGVAK*
Ga0114981_100230873	F016936	N/A	MNLELIHAELVRIREALEARPFASGAPAAKPASSFPKSDEIPMPTEIIADAGSVQVHFGKNKGVALSSLGDRSVAWYAQEPEPRLGNNGKPFPPRAEDVLLRNAARTLIHQKRGTLPSAAVPTAPAATSVNEEHVPF*
Ga0114981_100230876	F024061	AGG	MNTGEIKNQAVINNATEQFRSLLETHFIAIVRAAEESFVDDENQTEPKAKASFALEWDALSLAPKVVVKIGWSVRYKDETEAMVDPLQSKLGLVEEAK*