Scaffold Ga0114981_10011215

Overview

Basic Information

• Taxon OID: 3300009160
• Scaffold ID: Ga0114981_10011215
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5317
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000635	Metagenome / Metatranscriptome	970	Y
F003112	Metagenome / Metatranscriptome	506	N
F060703	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114981_100112151	F060703	AGGAG	VPYYSDNLDDLLAFDGIRSFAGGQASGLQSDLLAENQVQQLVNMTLSPKGSLETRKGVTSFSTSATSQEGSIGGMRYYDTSQTERLVAVIQGKLYTINSNGTAINSDGNIGPHRVEEIWDNLTGATRTWDNEAQKWADGFSTSFDAKVSMAQFNDKMYMAD
Ga0114981_100112152	F000635	N/A	MTLSEIAQFAGEKVGKTDSDTLTFLQKSASLAYRRVWDFAPWRETVTNSTYSVGTNRQITLGTNVETPLSVSYNDAEVDPIDLATIISQDPGLLDDARTGDPDTYHFTGRNSSGIAELNLYPRLKTAGTTPLRVVEKLKCLTRTNIIVDFPPSQTALDDELRLPHVHHLVLALTHADALERERQYAKAQSITQSANADLALMANYELSQVGGVKQITPQSLGELTIEEMFSA*
Ga0114981_100112156	F003112	GAG	MTGQEYACFKEALKFAVENNNMVKETKYIGKVKHLLSVNRSIKRIVEEGRDREEVTDAVVHLAVALRYLEGRGRES*