Scaffold Ga0114978_10147157

Overview

Basic Information

• Taxon OID: 3300009159
• Scaffold ID: Ga0114978_10147157
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1520
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006138	Metagenome / Metatranscriptome	380	Y
F012433	Metagenome / Metatranscriptome	280	N
F019290	Metagenome	230	Y
F090073	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_101471571	F090073	AGG	MSDILDEELSASFVQPHKSFKGEQIAEYTEGSRLLMLQCKDKNDSSVYFIWSFLYLHLLIHKNKREAIKLAWDRDAFRERVLDWVVDKTDGDRDIATNIVSKIIEDASKAR
Ga0114978_101471572	F019290	N/A	MEGSSYWGTTNIKVASAVAAFGGTLRQTDPVTHIVREDGSKQITFWFNSGGSGSTAKKEMEAKWSDMTSDQEAPIRYVRAALENRETLLGLVKRAEPIQIIKRGGQTLLVPTNAKPELKRAILKAI*
Ga0114978_101471573	F006138	GAGG	MPAVTVGNAGLVFGLSTETIGLVQSFSETRNIEKNEIRNASGDVSGIGYYNPTTAYSLSVAITGANTSLTVGGSFASLANATTVGTCRIDSIALNKTNTGFVTIDISATGYPNVT*
Ga0114978_101471574	F012433	GAG	MSADQVADLRERLARIEERQVNLIAVLERHTSEIAEWTSRMNGKVDTLERDAHTIKTKLWLVALISGAVFSTIWELIKVRVFPR*