Scaffold Ga0114978_10143044

Overview

Basic Information

• Taxon OID: 3300009159
• Scaffold ID: Ga0114978_10143044
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1546
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002037	Metagenome / Metatranscriptome	600	Y
F003066	Metagenome / Metatranscriptome	509	Y
F011384	Metagenome / Metatranscriptome	291	Y
F019123	Metagenome / Metatranscriptome	231	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_101430441	F002037	AGG	MSKIYWIFVVVMAALAIWGTEKALAQSTTILAPNGSVTICQTGSNGIVICV*
Ga0114978_101430443	F011384	GGAG	MYTKLDDQRQAKFIVNYMNEHPNCSIKEIVQQCVTNRTRLKYLESQGYFSLPKLTHKDILDRRFKNRNYVSVSVGREYGRWKGY*
Ga0114978_101430444	F019123	AGAAG	MDSKPLTQEEIIKAYKEAFGYGSQVVTLDRIFKFARLIEQLHGVKHVH*
Ga0114978_101430445	F003066	AGGA	MAKKEPVAWLYEEFDVKSGDLKKSYLWSFHPKELSYLNDLKGSTHHIKITPLFRGEKIEEYKSMNKYTEDTQRLIEANNGL*