Scaffold Ga0114978_10094016

Overview

Basic Information

• Taxon OID: 3300009159
• Scaffold ID: Ga0114978_10094016
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1987
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001477	Metagenome / Metatranscriptome	687	Y
F003863	Metagenome	464	Y
F014590	Metagenome	261	Y
F031792	Metagenome	181	Y
F083706	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_100940161	F083706	N/A	RGWLVFGILIGLATWGLWEVASHLLWTGSGWEWCESLLECESEDK*
Ga0114978_100940163	F031792	AGGAGG	MGYEPELNDPVFYAGDYEEAVKCFICGDQLDPDDIVWANVEGQIVKEGNDTAWCVSCLPSEGESNE*
Ga0114978_100940165	F001477	AGGAGG	MSNVYTIHPPKSDLILFYEVVEAGGENTWGGADAGQAIQWLTHAPVGSRILVSAWDSDEEDAHLVGQTLDITEIVRAASL*
Ga0114978_100940166	F003863	GAGG	MATASRKAVRDRNYRRARDRALVRLAHLYPDTYKQLLEMEKIEDEKQGKNWISIDGTTVLSVGVHTRANAVPDVAGRTDYESADESYNGGEA*
Ga0114978_100940167	F014590	GGAGG	VRTRHLHSVTSEHLDTVSNKESVPSPFGPVRAGLTTSQITNEARLSELLNSLESVVENLNYKSFEVYDTLNTAIEAVSVALSNTQTEGAGTDADRC*