Scaffold Ga0114978_10090401

Overview

Basic Information

• Taxon OID: 3300009159
• Scaffold ID: Ga0114978_10090401
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2034
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Chlorobi → unclassified Chlorobiota → Chlorobiota bacteirum (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006547	Metagenome / Metatranscriptome	370	Y
F006935	Metagenome	361	Y
F047676	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_100904012	F006547	N/A	VDKRKKWKIKMKWLLILLLPLSVSAQVYDTTYQMVYYQKSLIKKGKIELYVYSSYDIGWADESGMGITLTIPNKRKKKKHKR*
Ga0114978_100904013	F047676	N/A	MELIITLIALIIIWCVAFMVGAKQGANRTINQIKKDGGYFDMEITGAVYPYKKSSVNDDTMGTKIPPCVGHELESQKEIEKADIDFMHKWIREKSGK*
Ga0114978_100904016	F006935	N/A	MDKRYAKQIIEWAEEAKQTLTIRKEIIIDESVTDEKLGNIIRMMYKAKVETQNEQITKTKENARL*