Scaffold Ga0114978_10071297

Overview

Basic Information

• Taxon OID: 3300009159
• Scaffold ID: Ga0114978_10071297
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2341
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005300	Metagenome / Metatranscriptome	405	Y
F036593	Metagenome / Metatranscriptome	169	Y
F096612	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_100712973	F005300	AGGAG	MSKRIGPITLDGEAADWITVLTLKEHRNYLKKDLAEWKKNPRTDANPGGYWMHPEDVSGNEIMVHHLDAVIKHFGG*
Ga0114978_100712976	F036593	GGA	MINIDFSIVNPWRTDKIWDILWSKSRLITQNKAWEFNGYRTGRVINLQFEWTLQGDHAGARIMLGVFGYEAELAFYDTRHWDYDLATWKCYQ*
Ga0114978_100712977	F096612	GGA	MNALIERMASEAGLKYSPEQAEAVERLVRIAAAFCIDQCGGKGVCVGSTLVKNKILTAFDMNRPPERTF*