Scaffold Ga0114978

Basic Information
Taxon OID	3300009159 Open in IMG/M
Scaffold ID	Ga0114978_10064007 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009159 Open in IMG/M

Scaffold ID

Ga0114978_10064007 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2491
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

2491

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007690	Metagenome	346	Y
F018001	Metagenome	237	Y
F019478	Metagenome	229	Y
F042337	Metagenome	158	Y
F085695	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_100640071	F042337	AGG	MELVIDGLDKIRRTTYLARKISNIRIDKRNGARAASYVFTFPSIDSTLDGWNRELEVYLCKFPDGSGRYELFVMGLHGMTCHYLELEEIKDMVVFQVHIISTMNKAKKYWQSV*
Ga0114978_100640073	F007690	N/A	MLTIVNIDKLVNQKIWDGWEVREILEGTHNNTYIFELAKYRAHQGYATEKCIIMLERTGHTLPNKSNLVYFFIYNSQRTDICASADWLADKDNMIAKLEYILVNKENL*
Ga0114978_100640075	F018001	N/A	MLTIQNIGDLKGAQLNDWKVLDAGEDIRAELGKNIYIITFARMDNKGVMLDDRAGVIIDRNINPLLKGYHIKIVYESWDYEIDSIVWPAVNIRDKDVFFGRVLYKINEEYYKRR*
Ga0114978_100640076	F019478	N/A	MRNITNEDKPMLLKIINVNKMVGTVYWNRRFKCLQVHETDTNYRFQFDDVQIPNKYVWVEVRKDGHYNQENQVWEYRLNYMKCPHHIVTAEWFEDYKNVMDTFGSALKNSM*
Ga0114978_100640077	F085695	GAG	MGKVVLSTTPKGVNHFKELYDMNTKILHIKNYDKDLTRGVFYGWDVISADETDESYLFQLQNRTDIKLRVYITLGRVLQYSSLPYYPEMMYQCYIHDDEGSWSSTQWFRG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114978_10064007

Overview

Ecosystem & Geography

Associated Families

Sequences