Scaffold Ga0114978_10052159

Overview

Basic Information

• Taxon OID: 3300009159
• Scaffold ID: Ga0114978_10052159
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2818
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000354	Metagenome / Metatranscriptome	1244	Y
F009334	Metagenome / Metatranscriptome	319	Y
F022196	Metagenome / Metatranscriptome	215	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_100521591	F009334	AGGAG	MKTANVQGQTVQIGDWVGFKADIEQSGQIIDIKSSYMGQALVLENKGGFHGDYIGGDTITTQEARDCWIEG*
Ga0114978_100521596	F000354	GGAG	MAKKVNYDAFNSFDLNEACDHFDCVDQKQWAKIRPFIVADGQDYEAVMVEAFDFEAVTDSEHEAFCAGVKYALTKMNIAFDKAGVELEVAEVDLVEAYGYMLVRTDDEPEDFVKRALKKPVMMVEGWV*
Ga0114978_100521598	F022196	N/A	MNKQGHTMTQKSIPSSTGGVITYTKTGLIHTAGKAYSGKIAAQEAKSNKGK*