Scaffold Ga0114978_10045907

Overview

Basic Information

• Taxon OID: 3300009159
• Scaffold ID: Ga0114978_10045907
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3039
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001477	Metagenome / Metatranscriptome	687	Y
F003863	Metagenome	464	Y
F018135	Metagenome	236	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_1004590710	F003863	GGAGG	MESKQVSGRQVVHYRNYRRARDRALVRLAHLYPDTYKQLLDEQRSFDEQEGKIWSINPDSRLTVGIHTRANNTPPFGDPADAGEDEGNNGGEA*
Ga0114978_100459074	F018135	AGG	MTIERVKHSGAYVISEIAGEGRNAYLFTRTYYGYTLKQAKAQFKIAIEGEVA*
Ga0114978_100459078	F000821	N/A	MGKGRIMNEEYLKAKANLCLNQAEIDLKQEEIASAIKNLERANSALSRLFGLEGEADE*
Ga0114978_100459079	F001477	GGAG	MSNIYTIHPKKSPLILLYEVVDEEGRAEWGGNNAEHCMQWLSLAPSNSRVLVSGWESDEEDAHLVGQSLDITDIIKAASL*