Scaffold Ga0114978_10041680

Overview

Basic Information

• Taxon OID: 3300009159
• Scaffold ID: Ga0114978_10041680
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3217
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008496	Metagenome / Metatranscriptome	332	Y
F030094	Metagenome / Metatranscriptome	186	Y
F043404	Metagenome	156	Y
F093864	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_100416802	F008496	AGGAG	VDYPIPATVTEYKPEYDPKATMIIKKGYYYASPEQSRYEVENADDISRAFWRVDALTETNQRNSRAQDKLKDYLVENFEDIGEEYANEIANIMGIELSKSVEVEFNVTIKATITIPVNEEVSDLSTYDFDVEISSNNNDYEIEEFDADIDSIDERY*
Ga0114978_100416804	F043404	GAGG	MIDTTDPLLNELAFHFVDLHNVGGIELEQWETAYNFVKHFYHTEEMVQIIIREKR*
Ga0114978_100416806	F030094	GAGG	MKLRGIFEGTFESVWSMEVPQYEWDNYLEQHPDFDENDRDNIQEMWDYFKSIGCYDEIDDTVDKDVTMVGIETYGVEVEIN*
Ga0114978_100416807	F093864	GGAG	MYQYNVEFVLEAMVMITHVSFDEPDLPDDFIIQEARHNIMSYYKIDPEVLHLQDLIVHEV