Scaffold Ga0114978_10035398

Overview

Basic Information

• Taxon OID: 3300009159
• Scaffold ID: Ga0114978_10035398
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3535
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F001229	Metagenome / Metatranscriptome	741	Y
F001900	Metagenome / Metatranscriptome	620	Y
F005054	Metagenome / Metatranscriptome	413	Y
F073145	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_100353981	F073145	AGGAGG	MAQSVGNARNILVGASPLFLSNTDINDADYIANAEAGVAVTAAANTVGVPAFASGVSYTTSLNAVNQTAGLFGYRNVGFTNNGLQITYNPTYDSVTVDQLLDTAKLFKSAMEVMIATEMSEGTLENI
Ga0114978_100353982	F000258	GGAGG	VTANYKLDAMLELRKYLWEELYTRGIFDEDDYWSDNLNENIIPIIPVQQSPELNQFLSGKKHIVYDKIGMSYEDNWLICCEQILFTVYSTSVADINEIRNYMTDEFRRMDESARDINKWKDLSNKFKFYSIYIADISPTAPSEELQGFFSSEIILEIKYSRITDSDGSSSTLGRFL*
Ga0114978_100353983	F001900	GGA	MLIQAASGLERMMYANQKGVLKDSTVAQISAYVYYEAAVISKLTTNKPFQNAFGKMMFDQINLDFGNYIDSLARSKPKSLHHVYEWKKSGNKTARLFKLNKTAQLGLSFGINYEFLPSKSMVPASSGRRRHVFANKASIVEQGKPLVIRPKNAERLVFQIDDETIFMPKGASVTVKRPGGTGATNQFTLAHSRFFSGNLVNDSIKRSGFQKLFNSSITKALRVPSNIKKVQYSFSANTIRSQADSALTLSFGGAM*
Ga0114978_100353984	F001229	N/A	MNLDVYRQSEIQDTETGAIIKEWNYYKTLSCHAKGIISNTATSGSGNKQVFSNKYMDEQVIQIRTSEKLTAREKITNIRDSDNNVIWQEINYPNDTPTVFEVMGTTPMTDPFGRVIAYSSSLKRSENQQIGQ*
Ga0114978_100353985	F005054	N/A	MAEILINSQSPIVHQIFWNGDIAVADALPIVKIYDVTLDARVSPAVLATTVLATITSTLDENNPGTYSVNVPYALTNRNKTLKVNWEYSVGGVAVVRSDEVQVVTPYIDFNYIQDLGYSTDSSDPSYKSYKELIRAEKYARKQIEEYTGQKFYLYDETVMVYGYEYDTLPLPAKINQLHTLSVNDILLRDNINNIDNWNFPVQISESGYSIRINRAGMVDNTVYTANGMVPPSIHDYSGVFHSGVPYKVFARFGWDKVPENVELATAELMKDYFSKDTVWRNKYVKSISTFDWDFEYRGDAYTGTGNALADNLLADYVLTIKAEII*