Scaffold Ga0114978

Basic Information
Taxon OID	3300009159 Open in IMG/M
Scaffold ID	Ga0114978_10025643 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009159 Open in IMG/M

Scaffold ID

Ga0114978_10025643 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4269
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (77.78%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

4269

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (77.78%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001433	Metagenome	695	Y
F003150	Metagenome / Metatranscriptome	504	Y
F024733	Metagenome	204	Y
F044365	Metagenome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_100256432	F044365	AGGAG	MSLYVRIENGEVKDCWDTPPDGREGWKSAIEVKPAITPHRQYYTGHTFDLTKDPVEIVYGVADVTVADRKEQMKQQAQMAFNMLFRQQAADPSTYDPVALQAAKDAVAPKQAAIDACTTHDELDALL*
Ga0114978_100256435	F003150	AGG	MPDPFGIIDGAKSVTKTLNESVKASEELSKAIDGVLAVADKAAKERALSRKNSRVVNADTTTIIEAVDEFQRLMLAKQSEEKIKYEITKKYGSHAWDEIQGIKARKQWEERQDKYLEQSDRRVMKSVMALCYMFSAWIAYECTWGIWK*
Ga0114978_100256436	F001433	GAG	LEINMPLNNSEDTLSKILAYVDSPFKLFAVILMAILAFGAWSFYENRELIVGTYKESQKLPSIAEDRVDDVAVHLFKTTDATVVTIFKVNPLFGTRVQYRAYTKTGRDKTNDGLDVGLFTSNQANNQDVVALMAGNIPCGEYKAAQSEIGLWYLEKGMTFGCRISVPPDPSRFIGQITVGWDKPPIELEQTKAMLFIAATMLSRSKK*
Ga0114978_100256439	F024733	N/A	MQYKKFDQDLHDACDPPARDAVARWLNNLWYIDALPNPDKYAVDLVLSLKGDHLGYAEVEVRDWEFCPFNTIHIAHRKDKLFNHPRTTMYVVNRPLTHAYWIRANKIKDCPLIEVPNTAVAKDEYFYDVPKDLWKVVDLTDLF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114978_10025643

Overview

Ecosystem & Geography

Associated Families

Sequences