Scaffold Ga0114978_10017685

Overview

Basic Information

• Taxon OID: 3300009159
• Scaffold ID: Ga0114978_10017685
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5321
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019102	Metagenome	231	Y
F026543	Metagenome	197	N
F035669	Metagenome	171	Y
F093492	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_100176852	F026543	N/A	MTEAYWGTTNIKVASAVASFGAKPRSIDPVTRTIKEDGSTQATFWFEAGAGAEARAEMERPWAEMKSDPESPIRYVRAALENRETFLGLLKRAVPVRVIQRGGQTLLISENATSEQKRAILKHL*
Ga0114978_100176853	F019102	N/A	MSISLEEELNSAFISPQKEFMGEKLAPYTEGSRLLLLQVRDDNDSSIYFIWSFIYVHLLLAKNKKDAIKLCWNKDLFREKIMEYIEVKTEADREVATTIVSNILDEAQKGKVDVIPAPHQSDLGNA*
Ga0114978_100176856	F093492	N/A	MAFSIIGSSIDTKVLQRQNFNKEPNGLETIVETYAIKTSNRDTIVPNKDTLHSAFSSSTKTYSRMVVESVTTEEQDGGITQMLVTFVGLTSLTGLPPAIVRLIPTPGQGIYGAPLIIEAEFVTDITETEFIRGNIQGTSSINLGNVSFGSVNQMPTFINGTKMPSNPREPFKSSTRAAISEYFGYCTQSHSCERRGLFLVARTTYAEAATSFQ*
Ga0114978_100176857	F035669	GAG	MRENQLNELEGTSILTKSFFNKLIRRIEATKPIAGVGITIAEKENGFEISSSSIISGGGFTEKIINVCSNGVPSTLTIIAKA*