Scaffold Ga0114978_10017225

Overview

Basic Information

• Taxon OID: 3300009159
• Scaffold ID: Ga0114978_10017225
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5400
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F059973	Metagenome	133	N
F060916	Metagenome	132	N
F065788	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_100172252	F060916	N/A	MNNVDIVLDYIKTFYQVTVIKGDKNMIMFHDCIEIKNTSQVHFVGSAFGFEIYLVWDKAQIYTNIDIYKKESSESVSEFARKIKNVQTHSFLKYLSESLNKFDKQIQLHLRDVPEEFPGLYDENEIMDAPMYHQE*
Ga0114978_100172255	F065788	N/A	MDLSNEQILQIIDFIVNEDNCDTGIFAKFISESNYYSIDEFSNLIKTTKKIFNLDRYDIDFLFHVYNDNYDLILKDNLNAENMVIPVKKNYDITTQCMYNKSGFEYYESEQNIYSLKSIYWKYDNGSFYPNDGKLVDDDSSDYELQAWEIYDSSIKNNVKESKEERLKKLLMMKEIVDRKIKELL*
Ga0114978_100172258	F059973	N/A	MKKKMSVEEYSKLTNSNKLEIETLLFETVKEEMENLFSFLTVEKIEFNNYWEQVADEATRWKELSGFVLSNGKTYIRLPDIDDYMRGEDRDVNYSKTLYDIQENVFEFFGLPNTVIGAVLAWGDEDYFN*