Scaffold Ga0114978_10016272

Overview

Basic Information

• Taxon OID: 3300009159
• Scaffold ID: Ga0114978_10016272
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5581
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (94.12%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000714	Metagenome / Metatranscriptome	924	Y
F002071	Metagenome / Metatranscriptome	596	Y
F003663	Metagenome / Metatranscriptome	474	Y
F005177	Metagenome / Metatranscriptome	409	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_1001627211	F000714	GAGG	MEDTNYGATVTPVAPESYNANLLVTYKVIRGYSDAEYTTDKVSSIEWDLHNGREYNKRVTEFNNKIDTVKEIISEAYPDSEDQDTLRAIAEALDIELTRTVEFTATVEVTGTVEIDLLANYGTDVESEVTENLYVETQSGNIQVDEQYVTNVREC*
Ga0114978_100162722	F003663	AGG	MLSTAIGILDATKDSIFDEEIMGLAGELHERRNELSDETFAKYLFMYSTALSSKVADLVTKVCLTKEEMSVLCATIDEMDNLSETILEENN*
Ga0114978_100162724	F002071	AGGA	MTNSTLEVGTTYTTTQSGITGIIKSVDTLPNGTSRILLDVEGKDRWTSLSK*
Ga0114978_100162727	F005177	AGGA	MKNRYRVEIYDENKLNDLTIYSEQGVDKEYLTELVFSNLRRFNGTIRAYVYDNLKKKKTTALLLPTEFIPKKTKLTKLLG*