Scaffold Ga0114978_10015780

Overview

Basic Information

• Taxon OID: 3300009159
• Scaffold ID: Ga0114978_10015780
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5680
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006842	Metagenome	363	Y
F011646	Metagenome / Metatranscriptome	288	Y
F029021	Metagenome	189	Y
F038155	Metagenome	166	Y
F075713	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_1001578010	F006842	GGA	MSYTPVICGDHLVPISECDCVNYLQELKTSAKRLVQLAKEREEMK*
Ga0114978_1001578011	F029021	GAGG	MNICQFCGWEIARVDWYHRYNGKLICDNCVMDTMSEREKENVK*
Ga0114978_1001578012	F075713	AGGAG	MKVKDVLEALNGLPLEEMVAIQWYTKDDIELNLQRKITREVWEEVCEYACGEPDMNDFSIPHLLERAERDSE*
Ga0114978_1001578013	F011646	GGAG	VSNVVELRNGSLKRIIFYEVSDSQNIAIWGGESALEALKWYRNSPNGSKIYVQEWLTDEEDAKQVSSQIEITPIVLSTIANCMDRWV*
Ga0114978_100157807	F038155	N/A	MERKNGKAAKKKPKVQKKTGKTIGGYSLSKLAIRALKRGGKQ*