Scaffold Ga0114978_10011467

Overview

Basic Information

• Taxon OID: 3300009159
• Scaffold ID: Ga0114978_10011467
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6807
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001097	Metagenome / Metatranscriptome	780	Y
F007518	Metagenome	349	Y
F087091	Metagenome	110	Y
F104706	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_1001146716	F104706	N/A	MGRPSKPNTRYFQRTLTDPERMILLSAGKGNICRGFENVLDLYHYAHNQGFRPDMEMSILNIVADKQQPQTEDSMVG*
Ga0114978_100114672	F087091	AGGAG	MNFLDSYPTEFYISDVGYLVFKQDCFECGHQTQFLITPEQTKILLNILPEMIKQQTERWTGIQSPSEEV*
Ga0114978_100114673	F001097	N/A	MSFQWPLDDSSRIRALQELRSPRVAQTLPKEEIDDWLKQSIALVAGSVAGLAANQRRVRYFGFEKPHEQTKG*
Ga0114978_100114677	F007518	GAGG	MTDWTKEEDEAFNAVEKQSNLGKQILRDLGQPYHFDVFVSLSQRNHVLEEVAKEFDKMPFGDTASSFAIFVRNMKKTEG*