NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114978_10010096

Scaffold Ga0114978_10010096


Overview

Basic Information
Taxon OID3300009159 Open in IMG/M
Scaffold IDGa0114978_10010096 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7297
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (33.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006262Metagenome / Metatranscriptome377Y
F010611Metagenome / Metatranscriptome301N
F019637Metagenome / Metatranscriptome228Y
F044973Metagenome153N

Sequences

Protein IDFamilyRBSSequence
Ga0114978_100100964F044973N/AMKTPYDLDRVKLLNEAKDLVALGIKRGWLSYPRSVKLSALGTPIVVLEEQEDYEVTATAQDADICRKAYDLRERDLSLDDVAKACGVARGSVAYIIAKGHEMYLKQQRIDYNTTTVTYVQPKV*
Ga0114978_100100965F019637N/AMQNNHIQFLVDQYGLINVAWFIRLMKRGTTPEQIVGYCVPNSQDSRRDGVFRALQYAGDVPDSMLPPEILGALKP*
Ga0114978_100100966F010611GGAGMTQREYAKHAGVSHGYVTQLAAKGMPMHSPEVADAWRKKNIRSKSTTQHIQSPPIPDAPAIEQEGPYRPIEADTPLNTATAATDSPEGAYERQRQIERAAYDLAVDALRGGRADAGRLVAIHAAAAKNLTSARDEVITQAEKERRLVSGDWVRRVMQEHDGAVASLIKAMPKQLSGRIAPHDPEHAERELTRWVQEVALKTLHNTDPWKT*
Ga0114978_100100968F006262N/AVFTFTVAIKRAYLRSVYATLGGVTLLAALAAKSIAAATVIESGQVVRSTSSSDVSVEFAEPGKGAPTPSEMVEMWESLVDDYDLAVDYLEQDGIITPTDAQIYTKMVAVVLVAATSFGGDFSNFRREASYRMGMS*
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Institute for Fundamental Biomedical Research
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