NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114978_10009034

Scaffold Ga0114978_10009034


Overview

Basic Information
Taxon OID3300009159 Open in IMG/M
Scaffold IDGa0114978_10009034 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7764
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015571Metagenome / Metatranscriptome253Y
F035193Metagenome172N
F042160Metagenome158Y
F093230Metagenome106Y
F102529Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0114978_1000903412F102529AGGAGGMTFSIAEMFLLVWAIVATLGYGYSRGELKHHRMVTCDLLVKIAKGTIKVTETDDFIEFKEVE*
Ga0114978_1000903414F015571N/AVSKFGVQLFVAEVPMSDFRCGIASDIAEDLFATYSQQAQEIVSHVMVEQQSRFIEVMKSISHCCGVDDVGIDDNTGETKTKKRKIYDTTILKAKEMCDTFKGFNLSGDPELEQARASLEKALSGVTAEDIRESDAVRHAVKEDIDDILGKFSSFKCV*
Ga0114978_100090345F035193GGAMLHLIGELSPVVHPKHWELIRLPVRKVNEQYIVYVADGFHRIYTDDTLPDVLKSKFAMILANGGSANIPDSKILRLTLYTNTDSPELDEVGWRASETYFCLVVDRLTLESLKGGMQDDA*
Ga0114978_100090346F042160AGGAGMINRYYLDGFGTEEQLNELLASDVLPLVRELQFKYGLKVMGKVFNTSYPQEDKNAYMMCYPNGLAVCKVWTTVLGGVKNDQLEFCFRSQYYAKSRGQDQSDRETIRSTKLSSLMAVLKRQDVVRSKKELMDDKIKTVKNGAHNLRKAMGNSDKSMPFTPDEIHAMLATLLGESTDGIPVALDLHKCQNTLDIYKEADRIRGIKIEESKRFFKNPFYLIGIDDYHHLLIGKFKMTILHSDTHKIEYEVIEDFKRIKDIEDYPELVPLMTMMKVSYENKECRRIGKLNFPLLDKYDEGLDAVFFYNSNPTNYEHAWMATPCST*
Ga0114978_100090348F093230AGGAGVFNIVHGQHWKSVQLTKQEHDELVKQGSPRLHSYQDSDGKWDYYKYEVKPNILGVVRPDNTFEFTGSSFGQGDRGILSSWSHGWFSTDSRRGGMVWTSRTNAGTRIMPVYRGMRVDCETTQPTKPITVVGRKVDRKVGKTLLAKYVDFYMTTEVMTKAMDYDVFVKTMVEVVEEHLGEINSNTNWSVFADKADTLVNSAPLDAAMLYIYAWDVGNMRWNVRRFMDTSYSRFSAHEDTPHDMFINLKRRLNKEIYKANDGVFKKVEYTNQEMYPPSEWGYTVMVDGVEVKQYD*

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