Scaffold Ga0114978_10009034

Overview

Basic Information

• Taxon OID: 3300009159
• Scaffold ID: Ga0114978_10009034
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7764
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015571	Metagenome / Metatranscriptome	253	Y
F035193	Metagenome	172	N
F042160	Metagenome	158	Y
F093230	Metagenome	106	Y
F102529	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_1000903412	F102529	AGGAGG	MTFSIAEMFLLVWAIVATLGYGYSRGELKHHRMVTCDLLVKIAKGTIKVTETDDFIEFKEVE*
Ga0114978_1000903414	F015571	N/A	VSKFGVQLFVAEVPMSDFRCGIASDIAEDLFATYSQQAQEIVSHVMVEQQSRFIEVMKSISHCCGVDDVGIDDNTGETKTKKRKIYDTTILKAKEMCDTFKGFNLSGDPELEQARASLEKALSGVTAEDIRESDAVRHAVKEDIDDILGKFSSFKCV*
Ga0114978_100090345	F035193	GGA	MLHLIGELSPVVHPKHWELIRLPVRKVNEQYIVYVADGFHRIYTDDTLPDVLKSKFAMILANGGSANIPDSKILRLTLYTNTDSPELDEVGWRASETYFCLVVDRLTLESLKGGMQDDA*
Ga0114978_100090346	F042160	AGGAG	MINRYYLDGFGTEEQLNELLASDVLPLVRELQFKYGLKVMGKVFNTSYPQEDKNAYMMCYPNGLAVCKVWTTVLGGVKNDQLEFCFRSQYYAKSRGQDQSDRETIRSTKLSSLMAVLKRQDVVRSKKELMDDKIKTVKNGAHNLRKAMGNSDKSMPFTPDEIHAMLATLLGESTDGIPVALDLHKCQNTLDIYKEADRIRGIKIEESKRFFKNPFYLIGIDDYHHLLIGKFKMTILHSDTHKIEYEVIEDFKRIKDIEDYPELVPLMTMMKVSYENKECRRIGKLNFPLLDKYDEGLDAVFFYNSNPTNYEHAWMATPCST*
Ga0114978_100090348	F093230	AGGAG	VFNIVHGQHWKSVQLTKQEHDELVKQGSPRLHSYQDSDGKWDYYKYEVKPNILGVVRPDNTFEFTGSSFGQGDRGILSSWSHGWFSTDSRRGGMVWTSRTNAGTRIMPVYRGMRVDCETTQPTKPITVVGRKVDRKVGKTLLAKYVDFYMTTEVMTKAMDYDVFVKTMVEVVEEHLGEINSNTNWSVFADKADTLVNSAPLDAAMLYIYAWDVGNMRWNVRRFMDTSYSRFSAHEDTPHDMFINLKRRLNKEIYKANDGVFKKVEYTNQEMYPPSEWGYTVMVDGVEVKQYD*