Scaffold Ga0114978_10008989

Overview

Basic Information

• Taxon OID: 3300009159
• Scaffold ID: Ga0114978_10008989
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7787
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (5.26%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001808	Metagenome / Metatranscriptome	631	Y
F003299	Metagenome / Metatranscriptome	495	N
F003327	Metagenome / Metatranscriptome	494	Y
F009004	Metagenome / Metatranscriptome	324	Y
F019928	Metagenome / Metatranscriptome	227	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_1000898910	F009004	N/A	MKTFNEILDYLEVQQQEDKLNTNQLHLIIQTLTTFLNKEQLEEIENLFNQFKK*
Ga0114978_1000898912	F001808	N/A	MRYLAIILLLSSCSAQYHLNKAIKKGYTCEQTGDTIRITTLDSIPVIIHDSIVWEKFITTKDTIIKYNTVYVPKTRLEKKIEYKLKIKNIYKDRIVEKAQAKATRPRTRGNLNLLFVGVGIGLLLSYLFKFAREKYLF*
Ga0114978_1000898915	F019928	N/A	MKHSGVLSIIVFSLGYLTGISLLFEPALYLKLMGASIIGYLSFILALQMEGHE*
Ga0114978_100089896	F003299	N/A	MKIYKVVYKTFDYWNGPIKLVTRILEAYDADHVKQLIQKNDDLILLIEEV*
Ga0114978_100089897	F003327	N/A	MTEFTQLAREVQDTIANGDYTHQKYLQFREWYFQNYEGSKRNANRDFAMFDLMYGLDVPIKNNDNEDI*