Scaffold Ga0114978_10008051

Overview

Basic Information

• Taxon OID: 3300009159
• Scaffold ID: Ga0114978_10008051
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8286
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (88.89%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020509	Metagenome	223	Y
F028744	Metagenome	190	Y
F031377	Metagenome	182	Y
F039000	Metagenome	164	Y
F045551	Metagenome	152	N
F055432	Metagenome	138	N
F056339	Metagenome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_100080511	F045551	AGGAG	MTEQRELELLRPYVAACGEFVTKNAALEKQLKAIDRLLLEVLMGDTDPMQAMINRQKIKDEYEQS*
Ga0114978_1000805111	F056339	AGGA	MPIYKYDVCFPNSQSVIRTFPSLVRARDFMRIMSADDLPFLVMPWDENSSPLIVRRVKTPRKYHTQKAVKLDIIGPSQQKG*
Ga0114978_1000805116	F020509	GAG	MSNPVTPFRNNLFGSRGMDIQAALDYVDQLATASTDPVAVQTAARVLLNTIESAVTQSQGPSPVEEALFAIIDKRIAVLQINTQVEINASIDDWMDNNLRDKMMDILANEDIDDDISNWMSNNFDITDYNVDDAIESWAENNLDEKISEAVNNLTFTVNVN*
Ga0114978_100080513	F028744	N/A	MYEFLYECDELGLQLKCFFEYEPAEVGSIEPMSGMKLEPDYPEVWTLVSVFLPNSSVDLSGVLHPDVIFRIEQDAPIYFEEMRNVV*
Ga0114978_100080514	F031377	GGAG	MITNANDFISVDRINQRLTPFNTGKVQIGLLYQPPPPEMTDSEEIIQSVLLGTGSIHNEPPLWPVILGSCLLACLLIYFVG*
Ga0114978_100080515	F039000	AGGA	MTKRTDTTDKDIEQIMDDAQVLLNFCSNTFVKPADAWFACLVSSAILTAELSVPVDKFLEGFEHAYSDAMKAKNAMKGASYDH*
Ga0114978_100080519	F055432	AGAAG	MKKLTIEQRAFLEAYDNAVASAPRDEVVRFLTVTSEERSSRAFYDSMSDIYTSIFDAWEVWNQALKFARADKGMTVGTLSAALANLPRDLPVLIWDAGTRLGIAHIDDSFVEDENPRLELNTDRDD*